HL_8ANY_057

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANY_057 not in the Motif Atlas

Geometric match to HL_3F2X_001

Geometric discrepancy: 0.1396

The information below is about HL_3F2X_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

8ANY|1|AA|A|1399
8ANY|1|AA|U|1400
8ANY|1|AA|G|1401
8ANY|1|AA|A|1402
8ANY|1|AA|A|1403
8ANY|1|AA|A|1404
8ANY|1|AA|C|1405
8ANY|1|AA|U|1406
8ANY|1|AA|U|1407

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial

Chain m

39S ribosomal protein L55, mitochondrial