3D structure

PDB id
8AP4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
8AP4|1|a|G|2250
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8AP4_053 not in the Motif Atlas
Homologous match to HL_7A0S_052
Geometric discrepancy: 0.1093
The information below is about HL_7A0S_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8AP4|1|a|C|2248
8AP4|1|a|U|2249
8AP4|1|a|G|2250
8AP4|1|a|OMG|2251
8AP4|1|a|G|2252
8AP4|1|a|G|2253
8AP4|1|a|C|2254
8AP4|1|a|G|2255
8AP4|1|a|G|2256

Current chains

Chain a
23S rRNA

Nearby chains

Chain Z
Transfer RNA; tRNA
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0739 s