HL_8AYE_050

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8AYE|1|a|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AYE_050 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.2974

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8AYE|1|a|C|544
8AYE|1|a|U|545
8AYE|1|a|U|546
8AYE|1|a|A|547
8AYE|1|a|G|548
8AYE|1|a|G|549

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L13