HL_8AYE_102

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AYE_102 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.0717

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8AYE|1|A|C|522
8AYE|1|A|A|523
8AYE|1|A|G|524
8AYE|1|A|C|525
8AYE|1|A|C|526
8AYE|1|A|G7M|527

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12