HL_8B6C_043

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8B6C|1|5|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_043 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2573

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8B6C|1|5|G|2548
8B6C|1|5|G|2549
8B6C|1|5|U|2550
8B6C|1|5|U|2551
8B6C|1|5|C|2552
8B6C|1|5|C|2553

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

Protein transport protein Sec61 subunit alpha isoform 1

Chain R

60S ribosomal protein L19

Chain X

Ribosomal_L23eN domain-containing protein