HL_8B6C_055

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

8B6C|1|5|A|3608, 8B6C|1|5|A|3609, 8B6C|1|5|C|3610, 8B6C|1|5|G|3613

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0645

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8B6C|1|5|G|3605
8B6C|1|5|G|3606
8B6C|1|5|G|3607
8B6C|1|5|A|3608
8B6C|1|5|A|3609
8B6C|1|5|C|3610
8B6C|1|5|G|3611
8B6C|1|5|P7G|3612
8B6C|1|5|G|3613
8B6C|1|5|C|3614

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain e

Ribosomal protein L32