HL_8B6C_070
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- CU(B8K)AACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8B6C|1|5|G|4440, 8B6C|1|5|C|4444
- QA status
- Modified nucleotides: B8K
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B6C_070 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1086
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8B6C|1|5|C|4434
8B6C|1|5|U|4435
8B6C|1|5|B8K|4436
8B6C|1|5|A|4437
8B6C|1|5|A|4438
8B6C|1|5|C|4439
8B6C|1|5|G|4440
8B6C|1|5|C|4441
8B6C|1|5|C|4442
8B6C|1|5|U|4443
8B6C|1|5|C|4444
8B6C|1|5|U|4445
8B6C|1|5|A|4446
8B6C|1|5|A|4447
8B6C|1|5|G|4448
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- 60S ribosomal protein L13a
- Chain m
- 60S ribosomal protein L40
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