HL_8B6C_072

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8B6C|1|5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_072 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1003

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8B6C|1|5|G|4714
8B6C|1|5|U|4715
8B6C|1|5|A|4716
8B6C|1|5|G|4717
8B6C|1|5|A|4718
8B6C|1|5|C|4719
8B6C|1|5|G|4720
8B6C|1|5|A|4721
8B6C|1|5|C|4722

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain d

60S ribosomal protein L31