HL_8B7Y_011

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8B7Y|1|C|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_011 not in the Motif Atlas

Geometric match to HL_5J7L_175

Geometric discrepancy: 0.1854

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8B7Y|1|C|C|419
8B7Y|1|C|U|420
8B7Y|1|C|U|421
8B7Y|1|C|C|422
8B7Y|1|C|G|423
8B7Y|1|C|G|424

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain F

30S ribosomal protein S4