HL_8B7Y_019

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_019 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0892

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8B7Y|1|C|C|897
8B7Y|1|C|G|898
8B7Y|1|C|C|899
8B7Y|1|C|A|900
8B7Y|1|C|A|901
8B7Y|1|C|G|902

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA