HL_8B7Y_035

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8B7Y|1|I|U|138, 8B7Y|1|I|U|139, 8B7Y|1|I|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_035 not in the Motif Atlas

Geometric match to HL_5TBW_068

Geometric discrepancy: 0.3036

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8B7Y|1|I|U|137
8B7Y|1|I|U|138
8B7Y|1|I|U|139
8B7Y|1|I|C|140
8B7Y|1|I|G|141
8B7Y|1|I|A|142

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23