HL_8B7Y_037

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8B7Y|1|I|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_037 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0847

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8B7Y|1|I|G|194
8B7Y|1|I|A|195
8B7Y|1|I|A|196
8B7Y|1|I|A|197
8B7Y|1|I|C|198
8B7Y|1|I|A|199
8B7Y|1|I|U|200
8B7Y|1|I|C|201

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain f

50S ribosomal protein L28