HL_8B7Y_058

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_058 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1016

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|G|978
8B7Y|1|I|A|979
8B7Y|1|I|A|980
8B7Y|1|I|A|981
8B7Y|1|I|C|982
8B7Y|1|I|A|983
8B7Y|1|I|A|984
8B7Y|1|I|C|985

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain Z

50S ribosomal protein L21

Chain h

50S ribosomal protein L30