HL_8B7Y_071

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8B7Y|1|I|A|1614, 8B7Y|1|I|A|1616, 8B7Y|1|I|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_071 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0856

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8B7Y|1|I|C|1612
8B7Y|1|I|G|1613
8B7Y|1|I|A|1614
8B7Y|1|I|C|1615
8B7Y|1|I|A|1616
8B7Y|1|I|C|1617
8B7Y|1|I|A|1618
8B7Y|1|I|G|1619

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L22

Chain k

50S ribosomal protein L34

Chain z

Myxovalargin B