HL_8B7Y_086

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_086 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2338

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8B7Y|1|I|G|2303
8B7Y|1|I|G|2304
8B7Y|1|I|U|2305
8B7Y|1|I|C|2306
8B7Y|1|I|G|2307
8B7Y|1|I|G|2308
8B7Y|1|I|A|2309
8B7Y|1|I|C|2310
8B7Y|1|I|A|2311
8B7Y|1|I|U|2312
8B7Y|1|I|C|2313

Current chains

Chain I

23S ribosomal RNA

Nearby chains