HL_8B7Y_098

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8B7Y|1|I|U|2797, 8B7Y|1|I|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_098 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2284

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8B7Y|1|I|C|2795
8B7Y|1|I|U|2796
8B7Y|1|I|U|2797
8B7Y|1|I|U|2798
8B7Y|1|I|A|2799
8B7Y|1|I|A|2800
8B7Y|1|I|G|2801

Current chains

Chain I

23S ribosomal RNA

Nearby chains