HL_8B7Y_111

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

8B7Y|1|I|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_111 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2504

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B7Y|1|I|G|2304
8B7Y|1|I|U|2305
8B7Y|1|I|C|2306
8B7Y|1|I|G|2307
8B7Y|1|I|G|2308
8B7Y|1|I|A|2309
8B7Y|1|I|C|2310
8B7Y|1|I|A|2311
8B7Y|1|I|U|2312

Current chains

Chain I

23S ribosomal RNA

Nearby chains