HL_8BF7_004

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8BF7|1|0|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_004 not in the Motif Atlas

Geometric match to HL_4AY2_001

Geometric discrepancy: 0.189

The information below is about HL_4AY2_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8BF7|1|0|U|137
8BF7|1|0|U|138
8BF7|1|0|U|139
8BF7|1|0|C|140
8BF7|1|0|G|141
8BF7|1|0|A|142

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23