3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GUGCUAACGU
Length
10 nucleotides
Bulged bases
8BF7|1|0|U|958, 8BF7|1|0|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_025 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.2524
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8BF7|1|0|G|954
8BF7|1|0|U|955
8BF7|1|0|G|956
8BF7|1|0|C|957
8BF7|1|0|U|958
8BF7|1|0|A|959
8BF7|1|0|A|960
8BF7|1|0|C|961
8BF7|1|0|G|962
8BF7|1|0|U|963

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 1
5S ribosomal RNA; 5S rRNA
Chain J
50S ribosomal protein L16

Coloring options:


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