3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
8BF7|1|0|U|1396, 8BF7|1|0|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_033 not in the Motif Atlas
Homologous match to HL_5J7L_168
Geometric discrepancy: 0.1402
The information below is about HL_5J7L_168
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81545.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8BF7|1|0|G|1389
8BF7|1|0|U|1390
8BF7|1|0|U|1391
8BF7|1|0|A|1392
8BF7|1|0|A|1393
8BF7|1|0|U|1394
8BF7|1|0|A|1395
8BF7|1|0|U|1396
8BF7|1|0|U|1397
8BF7|1|0|C|1398

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain Q
50S ribosomal protein L23

Coloring options:


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