3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GAAGACGAC
Length
9 nucleotides
Bulged bases
8BF7|1|0|A|2820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_066 not in the Motif Atlas
Homologous match to HL_5J7L_201
Geometric discrepancy: 0.0942
The information below is about HL_5J7L_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8BF7|1|0|G|2819
8BF7|1|0|A|2820
8BF7|1|0|A|2821
8BF7|1|0|G|2822
8BF7|1|0|A|2823
8BF7|1|0|C|2824
8BF7|1|0|G|2825
8BF7|1|0|A|2826
8BF7|1|0|C|2827

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain K
50S ribosomal protein L17

Coloring options:


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