3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_097 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.1497
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8BF7|1|2|C|1314
8BF7|1|2|U|1315
8BF7|1|2|G|1316
8BF7|1|2|C|1317
8BF7|1|2|A|1318
8BF7|1|2|A|1319
8BF7|1|2|C|1320
8BF7|1|2|U|1321
8BF7|1|2|C|1322
8BF7|1|2|G|1323

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain q
30S ribosomal protein S13
Chain r
30S ribosomal protein S14
Chain w
30S ribosomal protein S19

Coloring options:


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