HL_8BF7_098

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8BF7|1|2|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1409

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BF7|1|2|G|1356
8BF7|1|2|A|1357
8BF7|1|2|U|1358
8BF7|1|2|C|1359
8BF7|1|2|A|1360
8BF7|1|2|G|1361
8BF7|1|2|A|1362
8BF7|1|2|A|1363
8BF7|1|2|U|1364
8BF7|1|2|G|1365
8BF7|1|2|C|1366

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14