HL_8BF7_111

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GACU(U8U)UU(T6A)AUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: U8U, T6A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_111 not in the Motif Atlas

Homologous match to HL_4WZD_209

Geometric discrepancy: 0.2061

The information below is about HL_4WZD_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BF7|1|5|G|30
8BF7|1|5|A|31
8BF7|1|5|C|32
8BF7|1|5|U|33
8BF7|1|5|U8U|34
8BF7|1|5|U|35
8BF7|1|5|U|36
8BF7|1|5|T6A|37
8BF7|1|5|A|38
8BF7|1|5|U|39
8BF7|1|5|C|40

Current chains

Chain 5

Dipeptidyl A-site tRNA(Lys)

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 3

mRNA

Chain p

30S ribosomal protein S12