HL_8BGE_031

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8BGE|1|0|U|1325, 8BGE|1|0|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGE_031 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1357

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8BGE|1|0|G|1324
8BGE|1|0|U|1325
8BGE|1|0|U|1326
8BGE|1|0|A|1327
8BGE|1|0|A|1328
8BGE|1|0|U|1329
8BGE|1|0|C|1330

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22