HL_8BGE_098

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGE_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1301

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BGE|1|2|C|1314
8BGE|1|2|U|1315
8BGE|1|2|G|1316
8BGE|1|2|C|1317
8BGE|1|2|A|1318
8BGE|1|2|A|1319
8BGE|1|2|C|1320
8BGE|1|2|U|1321
8BGE|1|2|C|1322
8BGE|1|2|G|1323

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain q

30S ribosomal protein S13

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19