HL_8BGH_025

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

8BGH|1|0|U|958, 8BGH|1|0|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_025 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2548

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8BGH|1|0|G|954
8BGH|1|0|U|955
8BGH|1|0|G|956
8BGH|1|0|C|957
8BGH|1|0|U|958
8BGH|1|0|A|959
8BGH|1|0|A|960
8BGH|1|0|C|961
8BGH|1|0|G|962
8BGH|1|0|U|963

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L16