HL_8BGH_045

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_045 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.269

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8BGH|1|0|C|1868
8BGH|1|0|G|1869
8BGH|1|0|C|1870
8BGH|1|0|A|1871
8BGH|1|0|A|1872
8BGH|1|0|G|1873

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains