HL_8BGH_058

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

8BGH|1|0|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_058 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1806

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BGH|1|0|A|2471
8BGH|1|0|G|2472
8BGH|1|0|U|2473
8BGH|1|0|U|2474
8BGH|1|0|C|2475
8BGH|1|0|A|2476
8BGH|1|0|U|2477
8BGH|1|0|A|2478
8BGH|1|0|U|2479

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain e

50S ribosomal protein L36