3D structure

PDB id
8BGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CUGUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BGH_060 not in the Motif Atlas
Homologous match to HL_4WF9_058
Geometric discrepancy: 0.183
The information below is about HL_4WF9_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48677.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
22

Unit IDs

8BGH|1|0|C|2551
8BGH|1|0|U|2552
8BGH|1|0|G|2553
8BGH|1|0|U|2554
8BGH|1|0|U|2555
8BGH|1|0|C|2556
8BGH|1|0|G|2557

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2201 s