HL_8BGH_061

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_061 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.1406

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8BGH|1|0|C|2594
8BGH|1|0|G|2595
8BGH|1|0|U|2596
8BGH|1|0|G|2597
8BGH|1|0|A|2598
8BGH|1|0|G|2599

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2