HL_8BGH_065

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8BGH|1|0|U|2797, 8BGH|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_065 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2462

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BGH|1|0|C|2795
8BGH|1|0|U|2796
8BGH|1|0|U|2797
8BGH|1|0|U|2798
8BGH|1|0|A|2799
8BGH|1|0|A|2800
8BGH|1|0|G|2801

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains