HL_8BGH_080

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8BGH|1|2|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_080 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.159

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8BGH|1|2|C|419
8BGH|1|2|U|420
8BGH|1|2|U|421
8BGH|1|2|C|422
8BGH|1|2|G|423
8BGH|1|2|G|424

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain h

30S ribosomal protein S4