HL_8BGH_081

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8BGH|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.4761

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BGH|1|2|G|462
8BGH|1|2|U|463
8BGH|1|2|U|464
8BGH|1|2|A|465
8BGH|1|2|A|466
8BGH|1|2|U|467
8BGH|1|2|A|468
8BGH|1|2|C|469
8BGH|1|2|C|470

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains