3D structure

PDB id
8BGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BGH_088 not in the Motif Atlas
Homologous match to HL_4LFB_019
Geometric discrepancy: 0.1158
The information below is about HL_4LFB_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8BGH|1|2|C|862
8BGH|1|2|U|863
8BGH|1|2|A|864
8BGH|1|2|A|865
8BGH|1|2|C|866
8BGH|1|2|G|867

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain i
30S ribosomal protein S5

Coloring options:


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