HL_8BGH_104
3D structure
- PDB id
- 8BGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BGH_104 not in the Motif Atlas
- Homologous match to HL_5WT1_003
- Geometric discrepancy: 0.1559
- The information below is about HL_5WT1_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8BGH|1|4|G|53
8BGH|1|4|U|54
8BGH|1|4|U|55
8BGH|1|4|C|56
8BGH|1|4|A|57
8BGH|1|4|A|58
8BGH|1|4|A|59
8BGH|1|4|U|60
8BGH|1|4|C|61
Current chains
- Chain 4
- Acylated P-site tRNA(fMet)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain J
- 50S ribosomal protein L16
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