HL_8BGH_106

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

8BGH|1|2|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_106 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1227

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BGH|1|2|U|12
8BGH|1|2|U|13
8BGH|1|2|U|14
8BGH|1|2|G|15
8BGH|1|2|A|16
8BGH|1|2|U|17
8BGH|1|2|C|18
8BGH|1|2|A|19
8BGH|1|2|U|20
8BGH|1|2|G|21
8BGH|1|2|G|22

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain i

30S ribosomal protein S5

Chain p

30S ribosomal protein S12