HL_8BH4_006

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8BH4|1|0|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.1281

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

8BH4|1|0|G|194
8BH4|1|0|A|195
8BH4|1|0|A|196
8BH4|1|0|A|197
8BH4|1|0|C|198
8BH4|1|0|A|199
8BH4|1|0|U|200
8BH4|1|0|C|201

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28