3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
UGUUGAAAAA
Length
10 nucleotides
Bulged bases
8BH4|1|0|U|747, 8BH4|1|0|A|751, 8BH4|1|0|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BH4_022 not in the Motif Atlas
Homologous match to HL_7A0S_022
Geometric discrepancy: 0.1098
The information below is about HL_7A0S_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

8BH4|1|0|U|744
8BH4|1|0|G|745
8BH4|1|0|U|746
8BH4|1|0|U|747
8BH4|1|0|G|748
8BH4|1|0|A|749
8BH4|1|0|A|750
8BH4|1|0|A|751
8BH4|1|0|A|752
8BH4|1|0|A|753

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain P
50S ribosomal protein L22
Chain a
50S ribosomal protein L32
Chain c
50S ribosomal protein L34

Coloring options:


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