HL_8BH4_025

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

8BH4|1|0|U|958, 8BH4|1|0|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_025 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2579

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BH4|1|0|G|954
8BH4|1|0|U|955
8BH4|1|0|G|956
8BH4|1|0|C|957
8BH4|1|0|U|958
8BH4|1|0|A|959
8BH4|1|0|A|960
8BH4|1|0|C|961
8BH4|1|0|G|962
8BH4|1|0|U|963

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L16