3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
CCCAGACAGCCGAG
Length
14 nucleotides
Bulged bases
8BH4|1|0|A|1046
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BH4_027 not in the Motif Atlas
Geometric match to HL_7D81_001
Geometric discrepancy: 0.3229
The information below is about HL_7D81_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50006.3
Basepair signature
cWW-F-F
Number of instances in this motif group
6

Unit IDs

8BH4|1|0|C|1043
8BH4|1|0|C|1044
8BH4|1|0|C|1045
8BH4|1|0|A|1046
8BH4|1|0|G|1047
8BH4|1|0|A|1048
8BH4|1|0|C|1049
8BH4|1|0|A|1050
8BH4|1|0|G|1051
8BH4|1|0|C|1052
8BH4|1|0|C|1109
8BH4|1|0|G|1110
8BH4|1|0|A|1111
8BH4|1|0|G|1112

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain E
50S ribosomal protein L6

Coloring options:


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