HL_8BH4_051

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8BH4|1|0|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_051 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1193

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8BH4|1|0|C|2248
8BH4|1|0|U|2249
8BH4|1|0|G|2250
8BH4|1|0|G|2251
8BH4|1|0|G|2252
8BH4|1|0|G|2253
8BH4|1|0|C|2254
8BH4|1|0|G|2255
8BH4|1|0|G|2256

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27