HL_8BH4_066

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8BH4|1|0|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0973

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8BH4|1|0|G|2819
8BH4|1|0|A|2820
8BH4|1|0|A|2821
8BH4|1|0|G|2822
8BH4|1|0|A|2823
8BH4|1|0|C|2824
8BH4|1|0|G|2825
8BH4|1|0|A|2826
8BH4|1|0|C|2827

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17