HL_8BH4_077

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1332

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BH4|1|2|A|320
8BH4|1|2|A|321
8BH4|1|2|C|322
8BH4|1|2|U|323
8BH4|1|2|G|324
8BH4|1|2|A|325
8BH4|1|2|G|326
8BH4|1|2|A|327
8BH4|1|2|C|328
8BH4|1|2|A|329
8BH4|1|2|C|330
8BH4|1|2|G|331
8BH4|1|2|G|332
8BH4|1|2|U|333

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20