3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
8BH4|1|2|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BH4_098 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.1521
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8BH4|1|2|G|1356
8BH4|1|2|A|1357
8BH4|1|2|U|1358
8BH4|1|2|C|1359
8BH4|1|2|A|1360
8BH4|1|2|G|1361
8BH4|1|2|A|1362
8BH4|1|2|A|1363
8BH4|1|2|U|1364
8BH4|1|2|G|1365
8BH4|1|2|C|1366

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain m
30S ribosomal protein S9
Chain n
30S ribosomal protein S10
Chain r
30S ribosomal protein S14

Coloring options:


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