HL_8BH4_098

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8BH4|1|2|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1521

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BH4|1|2|G|1356
8BH4|1|2|A|1357
8BH4|1|2|U|1358
8BH4|1|2|C|1359
8BH4|1|2|A|1360
8BH4|1|2|G|1361
8BH4|1|2|A|1362
8BH4|1|2|A|1363
8BH4|1|2|U|1364
8BH4|1|2|G|1365
8BH4|1|2|C|1366

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14