3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
CAG(H2U)(H2U)GG(H2U)AG
Length
10 nucleotides
Bulged bases
8BH4|1|5|G|18, 8BH4|1|5|G|19
QA status
Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BH4_104 not in the Motif Atlas
Homologous match to HL_3KFU_004
Geometric discrepancy: 0.2083
The information below is about HL_3KFU_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BH4|1|5|C|13
8BH4|1|5|A|14
8BH4|1|5|G|15
8BH4|1|5|H2U|16
8BH4|1|5|H2U|17
8BH4|1|5|G|18
8BH4|1|5|G|19
8BH4|1|5|H2U|20
8BH4|1|5|A|21
8BH4|1|5|G|22

Current chains

Chain 5
Dipeptidyl A-site tRNA(Lys)

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain 4
Transfer RNA; tRNA
Chain J
50S ribosomal protein L16

Coloring options:


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