HL_8BH4_109
3D structure
- PDB id
- 8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8BH4|1|1|C|35, 8BH4|1|1|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BH4_109 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1686
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8BH4|1|1|A|34
8BH4|1|1|C|35
8BH4|1|1|C|36
8BH4|1|1|C|37
8BH4|1|1|C|38
8BH4|1|1|A|39
8BH4|1|1|U|40
8BH4|1|1|G|41
8BH4|1|1|C|42
8BH4|1|1|C|43
8BH4|1|1|G|44
8BH4|1|1|A|45
8BH4|1|1|A|46
8BH4|1|1|C|47
8BH4|1|1|U|48
Current chains
- Chain 1
- 5S rRNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
Coloring options: