HL_8BH4_111

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAAC

Length

35 nucleotides

Bulged bases

8BH4|1|2|C|1028, 8BH4|1|2|U|1029, 8BH4|1|2|U|1030, 8BH4|1|2|C|1031, 8BH4|1|2|A|1036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|2|G|1003
8BH4|1|2|A|1004
8BH4|1|2|A|1005
8BH4|1|2|G|1006
8BH4|1|2|U|1007
8BH4|1|2|U|1008
8BH4|1|2|U|1009
8BH4|1|2|U|1010
8BH4|1|2|C|1011
8BH4|1|2|A|1012
8BH4|1|2|G|1013
8BH4|1|2|A|1014
8BH4|1|2|G|1015
8BH4|1|2|A|1016
8BH4|1|2|U|1017
8BH4|1|2|G|1018
8BH4|1|2|A|1019
8BH4|1|2|G|1020
8BH4|1|2|A|1021
8BH4|1|2|A|1022
8BH4|1|2|U|1023
8BH4|1|2|G|1024
8BH4|1|2|U|1025
8BH4|1|2|G|1026
8BH4|1|2|C|1027
8BH4|1|2|C|1028
8BH4|1|2|U|1029
8BH4|1|2|U|1030
8BH4|1|2|C|1031
8BH4|1|2|G|1032
8BH4|1|2|G|1033
8BH4|1|2|G|1034
8BH4|1|2|A|1035
8BH4|1|2|A|1036
8BH4|1|2|C|1037

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19