HL_8BHJ_046

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHJ_046 not in the Motif Atlas

Geometric match to HL_4ZT0_006

Geometric discrepancy: 0.1339

The information below is about HL_4ZT0_006

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHJ|1|0|C|1868
8BHJ|1|0|G|1869
8BHJ|1|0|C|1870
8BHJ|1|0|A|1871
8BHJ|1|0|A|1872
8BHJ|1|0|G|1873

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains