HL_8BHJ_058

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8BHJ|1|0|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHJ_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1355

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

8BHJ|1|0|U|2404
8BHJ|1|0|G|2405
8BHJ|1|0|A|2406
8BHJ|1|0|A|2407
8BHJ|1|0|U|2408
8BHJ|1|0|G|2409
8BHJ|1|0|G|2410
8BHJ|1|0|A|2411
8BHJ|1|0|A|2412
8BHJ|1|0|G|2413

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15